Installation

You must use conda environment : https://docs.conda.io/en/latest/index.html

Users

Create a new environment with stat_tool installed in there

mamba create -n stat_tool -c openalea3 -c conda-forge  openalea.stat_tool
mamba activate stat_tool

Install stat_tool in a existing environment

mamba install -c openalea3 -c conda-forge openalea.stat_tool

(Optional) Test your installation

mamba install -c conda-forge pytest
git clone https://github.com/openalea/stat_tool.git
cd stat_tool/test; pytest

Developers

Install From source

# Install dependency with conda
mamba env create -n stat -f conda/environment.yml
mamba activate stat_tool

# Clone stat_tool and install
git clone https://github.com/openalea/stat_tool.git
cd stat_tool
pip install --no-build-isolation -e .
# (Optional) Test your installation
cd test; pytest

Compilation options for developers such as WITH_TEST, WITH_EFENCE are defined in pyproject.toml. They can be used with

pip install --no-build-isolation --config-settings=cmake.define.WITH_TEST=TRUE -e .
pip install --no-build-isolation --config-settings=cmake.build-type="Debug" -e .

and also combined:

pip install --no-build-isolation --config-settings=cmake.define.WITH_TEST=TRUE --config-settings=cmake.define.WITH_EFENCE=TRUE --config-settings=cmake.build-type="Debug" -e .