# Clustering with stat_tool
## This notebook illustates how to perform clustering of vectors with stat_tool.cluster ##
Load a data set (chene_sessile.vec)
[1]:
from openalea.stat_tool import get_shared_data
from openalea.stat_tool.data_transform import SelectVariable
from openalea.stat_tool.comparison import Compare
from openalea.stat_tool.cluster import Clustering
from openalea.stat_tool.vectors import VectorDistance, Vectors
vec = Vectors(get_shared_data("chene_sessile.vec"))
Running cmake --build & --install in /home/jdurand/devlp/Git/openalea/stat_tool/build
Running cmake --build & --install in /home/jdurand/devlp/Git/openalea/sequence_analysis/build
[2]:
vec.nb_vector
[2]:
138
[3]:
vec.nb_variable
[3]:
6
vec contains 138 vectors in dimension 6
Discard variables 1, 3 and 6 in vec
[4]:
from openalea.stat_tool.data_transform import SelectVariable
vec2 = SelectVariable(vec, [1, 3, 6], Mode="Reject")
Computation of a 138x138 distance matrix using a standardization procedure
Arguments “N” specify that vector components are Numerical
[5]:
matrix = Compare(vec2, VectorDistance("N", "N", "N"))
[6]:
matrix.nb_column, matrix.nb_row
[6]:
(138, 138)
Clustering using a partitioning method#
[7]:
clust1 = Clustering(matrix, "Partition", 2)
print(clust1)
cluster 1 (69 vectors): 69, 48, 41, 44, 32, 47, 81, 95, 11, 36, 75, 108, 56, 83, 38, 98, 113, 134, 110, 101, 77, 35, 74, 80, 50, 24, 89, 128, 5, 45, 8, 116, 119, 132, 61, 78, 53, 29, 131, 65, 90, 96, 104, 20, 86, 66, 42, 68, 125, 14, 23, 54, 33, 26, 71, 129, 102, 51, 70, 111, 138, 19, 127, 62, 117, 137, 2, 28, 17
cluster 2 (69 vectors): 100, 13, 133, 105, 72, 9, 93, 109, 30, 115, 63, 7, 55, 37, 15, 114, 106, 46, 73, 18, 3, 87, 58, 43, 60, 76, 52, 6, 39, 31, 12, 99, 121, 123, 22, 79, 94, 88, 21, 97, 25, 40, 57, 136, 67, 49, 10, 4, 120, 92, 27, 91, 64, 124, 16, 130, 84, 107, 126, 103, 122, 112, 59, 1, 82, 34, 135, 118, 85
cluster distance matrix
| cluster 1 | cluster 2
cluster 1 0.444986 1.46646
cluster 2 1.46646 0.608382
| within-cluster distance | between-cluster distance | diameter | separation
cluster 1 0.444986 1.46646 1.26444 0.0656281
cluster 2 0.608382 1.46646 2.02706 0.0656281
cluster 1: non-isolated
cluster 2: non-isolated
Number of clusters
[8]:
nb_clusters = clust1.get_nb_cluster()
print(nb_clusters)
2
Cluster of individual (“pattern”) 2
[9]:
clust1.get_assignment(2)
[9]:
1
To get the partition:
[10]:
part1 = [[i for i in range(1,vec.nb_vector+1) if clust1.get_assignment(i) == c] for c in range(1,nb_clusters+1)]
print(part1)
[[2, 5, 8, 11, 14, 17, 19, 20, 23, 24, 26, 28, 29, 32, 33, 35, 36, 38, 41, 42, 44, 45, 47, 48, 50, 51, 53, 54, 56, 61, 62, 65, 66, 68, 69, 70, 71, 74, 75, 77, 78, 80, 81, 83, 86, 89, 90, 95, 96, 98, 101, 102, 104, 108, 110, 111, 113, 116, 117, 119, 125, 127, 128, 129, 131, 132, 134, 137, 138], [1, 3, 4, 6, 7, 9, 10, 12, 13, 15, 16, 18, 21, 22, 25, 27, 30, 31, 34, 37, 39, 40, 43, 46, 49, 52, 55, 57, 58, 59, 60, 63, 64, 67, 72, 73, 76, 79, 82, 84, 85, 87, 88, 91, 92, 93, 94, 97, 99, 100, 103, 105, 106, 107, 109, 112, 114, 115, 118, 120, 121, 122, 123, 124, 126, 130, 133, 135, 136]]
Recreate clusters from partition
[11]:
print(matrix.partitioning_clusters(part1))
cluster 1 (69 vectors): 69, 48, 41, 44, 32, 47, 81, 95, 11, 36, 75, 108, 56, 83, 38, 98, 113, 134, 110, 101, 77, 35, 74, 80, 50, 24, 89, 128, 5, 45, 8, 116, 119, 132, 61, 78, 53, 29, 131, 65, 90, 96, 104, 20, 86, 66, 42, 68, 125, 14, 23, 54, 33, 26, 71, 129, 102, 51, 70, 111, 138, 19, 127, 62, 117, 137, 2, 28, 17
cluster 2 (69 vectors): 100, 13, 133, 105, 72, 9, 93, 109, 30, 115, 63, 7, 55, 37, 15, 114, 106, 46, 73, 18, 3, 87, 58, 43, 60, 76, 52, 6, 39, 31, 12, 99, 121, 123, 22, 79, 94, 88, 21, 97, 25, 40, 57, 136, 67, 49, 10, 4, 120, 92, 27, 91, 64, 124, 16, 130, 84, 107, 126, 103, 122, 112, 59, 1, 82, 34, 135, 118, 85
cluster distance matrix
| cluster 1 | cluster 2
cluster 1 0.444986 1.46646
cluster 2 1.46646 0.608382
| within-cluster distance | between-cluster distance | diameter | separation
cluster 1 0.444986 1.46646 1.26444 0.0656281
cluster 2 0.608382 1.46646 2.02706 0.0656281
cluster 1: non-isolated
cluster 2: non-isolated
Hierarchical clustering and dendrogram using an agglomerative algorithm#
[12]:
clust2 = Clustering(matrix, "Hierarchy", "Agglomerative")
print(clust2)
138 vectors
| child cluster distance | within-cluster distance | between-cluster distance | diameter | separation | composition
step 1 0 0 0.845491 0 0.0563999 7, 55
step 2 0 0 0.883565 0 0.0345239 24, 89
step 3 0 0 0.911651 0 0.0345239 41, 44
step 4 0.0126479 0.0126479 1.18625 0.0126479 0.0782759 21, 94
step 5 0.0126479 0.0126479 0.760368 0.0126479 0.021876 27, 120
step 6 0.0126479 0.0126479 0.913273 0.0126479 0.0345239 81, 95
step 7 0.0126479 0.0126479 0.762643 0.0126479 0.0345239 103, 122
step 8 0.0126479 0.0126479 1.0078 0.0126479 0.0345239 113, 134
step 9 0.021876 0.021876 1.08646 0.021876 0.0252957 8, 61
step 10 0.021876 0.021876 0.967306 0.021876 0.0345239 11, 38
step 11 0.0282 0.0230159 0.765583 0.0345239 0.0252957 27, 120, 91
step 12 0.021876 0.021876 0.868665 0.021876 0.0563999 51, 70
step 13 0.0362337 0.0314478 1.09889 0.0471717 0.0471717 8, 61, 29
step 14 0.0252957 0.0252957 0.921014 0.0252957 0.0379436 13, 100
step 15 0.0440957 0.0335558 0.77085 0.0598196 0.0345239 16, 27, 120, 91
step 16 0.0252957 0.0252957 1.2527 0.0252957 0.0345239 23, 33
step 17 0.0252957 0.0252957 0.775549 0.0252957 0.0656281 28, 117
step 18 0.0252957 0.0252957 0.79839 0.0252957 0.0656281 62, 138
step 19 0.0252957 0.0252957 0.890767 0.0252957 0.0345239 83, 110
step 20 0.0454619 0.0375999 0.968891 0.0563999 0.0345239 11, 38, 32
step 21 0.0739196 0.0536893 0.78211 0.106991 0.0345239 16, 27, 120, 91, 103, 122
step 22 0.0471717 0.0398797 1.24669 0.0598196 0.0379436 23, 33, 42
step 23 0.0345239 0.0230159 0.887222 0.0345239 0.0379436 24, 89, 116
step 24 0.047968 0.042784 0.968338 0.0656281 0.0345239 11, 38, 32, 48
step 25 0.0704999 0.0538703 0.981483 0.100152 0.0379436 11, 38, 32, 48, 77
step 26 0.0345239 0.0345239 1.23769 0.0345239 0.0379436 40, 57
step 27 0.0408478 0.0293399 0.925471 0.0471717 0.0379436 41, 44, 81, 95
step 28 0.0345239 0.0314478 0.899478 0.0345239 0.0379436 56, 83, 110
step 29 0.0345239 0.0345239 0.938001 0.0345239 0.043752 63, 93
step 30 0.0408478 0.0314478 1.00594 0.0471717 0.0505915 75, 113, 134
step 31 0.0513877 0.0530317 0.787684 0.106991 0.0656281 16, 27, 120, 91, 103, 122, 124
step 32 0.0379436 0.0379436 0.855993 0.0379436 0.0563999 2, 127
step 33 0.0379436 0.0379436 0.831399 0.0379436 0.0563999 3, 18
step 34 0.0505915 0.0421595 0.937767 0.0632393 0.0656281 9, 13, 100
step 35 0.0379436 0.0379436 0.87456 0.0379436 0.0598196 14, 54
step 36 0.0379436 0.0379436 0.779505 0.0379436 0.0632393 22, 97
step 37 0.0410196 0.0320178 0.894159 0.0471717 0.0690478 24, 89, 116, 53
step 38 0.0379436 0.0379436 0.855449 0.0379436 0.0563999 30, 46
step 39 0.0559222 0.0545543 0.984221 0.100152 0.0379436 11, 38, 32, 48, 77, 108
step 40 0.0749736 0.0603884 0.996551 0.106991 0.0379436 11, 38, 32, 48, 77, 108, 98
step 41 0.0678767 0.0622605 1.0035 0.106991 0.043752 11, 38, 32, 48, 77, 108, 98, 101
step 42 0.0583675 0.0462282 0.936685 0.0851153 0.043752 41, 44, 81, 95, 56, 83, 110
step 43 0.0693914 0.0546356 1.239 0.0977632 0.043752 23, 33, 42, 104
step 44 0.0425577 0.0398797 1.25903 0.0471717 0.0563999 40, 57, 49
step 45 0.0379436 0.0379436 1.07673 0.0379436 0.0471717 119, 128
step 46 0.043752 0.043752 0.947424 0.043752 0.0690478 5, 78
step 47 0.130293 0.0953383 1.0233 0.219791 0.043752 11, 38, 32, 48, 77, 108, 98, 101, 41, 44, 81, 95, 56, 83, 110
step 48 0.0768238 0.0635109 1.23707 0.103572 0.0563999 23, 33, 42, 104, 96
step 49 0.0862301 0.0941997 1.03095 0.219791 0.0471717 11, 38, 32, 48, 77, 108, 98, 101, 41, 44, 81, 95, 56, 83, 110, 69
step 50 0.061014 0.0521839 0.933878 0.0782759 0.0505915 63, 93, 133
step 51 0.0471717 0.0471717 0.95163 0.0471717 0.0471717 36, 47
step 52 0.0471717 0.0471717 0.995691 0.0471717 0.0598196 37, 106
step 53 0.0661435 0.0567436 1.07975 0.0851153 0.0471717 45, 119, 128
step 54 0.118571 0.0989895 1.048 0.219791 0.0505915 11, 38, 32, 48, 77, 108, 98, 101, 41, 44, 81, 95, 56, 83, 110, 69, 36, 47
step 55 0.111207 0.0843627 1.11155 0.179459 0.0656281 8, 61, 29, 45, 119, 128
step 56 0.132286 0.106587 1.08131 0.248507 0.0563999 11, 38, 32, 48, 77, 108, 98, 101, 41, 44, 81, 95, 56, 83, 110, 69, 36, 47, 75, 113, 134
step 57 0.0713276 0.0617558 0.949872 0.103572 0.0563999 63, 93, 133, 109
step 58 0.0505915 0.0505915 1.20298 0.0505915 0.0563999 86, 125
step 59 0.0627238 0.0481398 0.850023 0.0690478 0.0782759 3, 18, 7, 55
step 60 0.0636919 0.0517858 1.27837 0.0690478 0.0816956 10, 40, 57, 49
step 61 0.0753717 0.0628957 0.857606 0.0943435 0.0598196 30, 46, 115
step 62 0.0563999 0.0563999 1.06846 0.0563999 0.122028 31, 60
step 63 0.149733 0.110509 1.08732 0.250895 0.0656281 11, 38, 32, 48, 77, 108, 98, 101, 41, 44, 81, 95, 56, 83, 110, 69, 36, 47, 75, 113, 134, 35
step 64 0.0972477 0.0759525 0.962431 0.134676 0.0782759 63, 93, 133, 109, 73
step 65 0.0736618 0.0590778 0.8741 0.0909238 0.0724675 2, 127, 51, 70
step 66 0.0994026 0.079987 1.25177 0.163391 0.0690478 23, 33, 42, 104, 96, 86, 125
step 67 0.0787914 0.0651755 0.884129 0.0977632 0.0909238 14, 54, 66
step 68 0.0615295 0.0567436 1.01765 0.0632393 0.0690478 37, 106, 87
step 69 0.0808994 0.0718975 0.867262 0.110411 0.0782759 30, 46, 115, 105
step 70 0.0822111 0.0674553 0.790057 0.101183 0.088535 22, 97, 39
step 71 0.0656281 0.0656281 0.914738 0.0656281 0.0724675 15, 43
step 72 0.0782759 0.0606159 0.797547 0.0909238 0.0656281 28, 117, 62, 138
step 73 0.167784 0.112279 0.816318 0.263543 0.113831 16, 27, 120, 91, 103, 122, 124, 28, 117, 62, 138
step 74 0.0656281 0.0656281 0.861875 0.0656281 0.0724675 68, 90
step 75 0.0951397 0.0686496 0.932222 0.128867 0.0690478 9, 13, 100, 72
step 76 0.213303 0.145368 1.16847 0.358918 0.0724675 8, 61, 29, 45, 119, 128, 11, 38, 32, 48, 77, 108, 98, 101, 41, 44, 81, 95, 56, 83, 110, 69, 36, 47, 75, 113, 134, 35
step 77 0.0909238 0.0751999 0.940275 0.1128 0.0690478 5, 78, 80
step 78 0.0954834 0.0761135 1.0311 0.132287 0.0690478 6, 37, 106, 87
step 79 0.154421 0.119261 1.00711 0.261154 0.0782759 6, 37, 106, 87, 9, 13, 100, 72
step 80 0.114053 0.0850638 0.934943 0.1692 0.0690478 5, 78, 80, 24, 89, 116, 53
step 81 0.129015 0.0922439 1.27621 0.172619 0.0690478 23, 33, 42, 104, 96, 86, 125, 26
step 82 0.137668 0.102338 1.29949 0.191076 0.0816956 23, 33, 42, 104, 96, 86, 125, 26, 71
step 83 0.11988 0.0937678 0.936256 0.209532 0.0690478 5, 78, 80, 24, 89, 116, 53, 132
step 84 0.170781 0.110882 0.937799 0.27858 0.0724675 5, 78, 80, 24, 89, 116, 53, 132, 131
step 85 0.0834055 0.0774797 0.933912 0.0943435 0.0977632 15, 43, 76
step 86 0.153907 0.145957 1.17948 0.358918 0.0758872 8, 61, 29, 45, 119, 128, 11, 38, 32, 48, 77, 108, 98, 101, 41, 44, 81, 95, 56, 83, 110, 69, 36, 47, 75, 113, 134, 35, 74
step 87 0.113912 0.0810117 0.87747 0.163391 0.0782759 2, 127, 51, 70, 102
step 88 0.170795 0.129667 0.942781 0.322332 0.0758872 5, 78, 80, 24, 89, 116, 53, 132, 131, 68, 90
step 89 0.0724675 0.0724675 1.15619 0.0724675 0.0782759 121, 123
step 90 0.263482 0.192873 1.24421 0.591357 0.0782759 5, 78, 80, 24, 89, 116, 53, 132, 131, 68, 90, 8, 61, 29, 45, 119, 128, 11, 38, 32, 48, 77, 108, 98, 101, 41, 44, 81, 95, 56, 83, 110, 69, 36, 47, 75, 113, 134, 35, 74
step 91 0.130301 0.0974413 0.881249 0.216371 0.0875041 2, 127, 51, 70, 102, 17
step 92 0.09699 0.0676799 0.852929 0.10938 0.088535 3, 18, 7, 55, 12
step 93 0.120834 0.0947416 1.1869 0.163391 0.0816956 21, 94, 121, 123
step 94 0.106136 0.0855931 0.86533 0.144935 0.0782759 30, 46, 115, 105, 58
step 95 0.224119 0.194397 1.25595 0.591357 0.0816956 5, 78, 80, 24, 89, 116, 53, 132, 131, 68, 90, 8, 61, 29, 45, 119, 128, 11, 38, 32, 48, 77, 108, 98, 101, 41, 44, 81, 95, 56, 83, 110, 69, 36, 47, 75, 113, 134, 35, 74, 50
step 96 0.178217 0.132363 1.02524 0.314135 0.0909238 6, 37, 106, 87, 9, 13, 100, 72, 52
step 97 0.196191 0.144894 0.941916 0.326783 0.0851153 30, 46, 115, 105, 58, 63, 93, 133, 109, 73
step 98 0.404658 0.255027 1.41022 0.864128 0.119639 5, 78, 80, 24, 89, 116, 53, 132, 131, 68, 90, 8, 61, 29, 45, 119, 128, 11, 38, 32, 48, 77, 108, 98, 101, 41, 44, 81, 95, 56, 83, 110, 69, 36, 47, 75, 113, 134, 35, 74, 50, 23, 33, 42, 104, 96, 86, 125, 26, 71
step 99 0.132287 0.106991 1.26649 0.176039 0.113831 10, 40, 57, 49, 21, 94, 121, 123
step 100 0.233774 0.161054 0.958578 0.411898 0.0977632 30, 46, 115, 105, 58, 63, 93, 133, 109, 73, 114
step 101 0.199508 0.126603 0.893597 0.303876 0.0943435 2, 127, 51, 70, 102, 17, 19
step 102 0.196735 0.136793 0.847374 0.280642 0.0943435 3, 18, 7, 55, 12, 22, 97, 39
step 103 0.0909238 0.0909238 1.34261 0.0909238 0.113831 4, 84
step 104 0.200689 0.146028 1.0366 0.314135 0.0943435 6, 37, 106, 87, 9, 13, 100, 72, 52, 99
step 105 0.143451 0.104313 0.891958 0.188687 0.101183 14, 54, 66, 65
step 106 0.370684 0.261805 0.994816 0.667244 0.0943435 3, 18, 7, 55, 12, 22, 97, 39, 6, 37, 106, 87, 9, 13, 100, 72, 52, 99
step 107 0.334707 0.269479 1.00892 0.667244 0.0977632 3, 18, 7, 55, 12, 22, 97, 39, 6, 37, 106, 87, 9, 13, 100, 72, 52, 99, 25
step 108 0.146153 0.131491 0.891046 0.303876 0.123059 2, 127, 51, 70, 102, 17, 19, 137
step 109 0.347239 0.277255 1.00693 0.667244 0.0977632 3, 18, 7, 55, 12, 22, 97, 39, 6, 37, 106, 87, 9, 13, 100, 72, 52, 99, 25, 79
step 110 0.220267 0.261371 1.03144 0.667244 0.0977632 3, 18, 7, 55, 12, 22, 97, 39, 6, 37, 106, 87, 9, 13, 100, 72, 52, 99, 25, 79, 15, 43, 76
step 111 0.291649 0.265191 1.10851 0.667244 0.110411 3, 18, 7, 55, 12, 22, 97, 39, 6, 37, 106, 87, 9, 13, 100, 72, 52, 99, 25, 79, 15, 43, 76, 30, 46, 115, 105, 58, 63, 93, 133, 109, 73, 114
step 112 0.182281 0.135501 0.896034 0.28987 0.119639 14, 54, 66, 65, 129
step 113 0.106991 0.106991 1.32714 0.106991 0.11622 64, 130
step 114 0.428133 0.274502 1.10848 0.726032 0.113831 3, 18, 7, 55, 12, 22, 97, 39, 6, 37, 106, 87, 9, 13, 100, 72, 52, 99, 25, 79, 15, 43, 76, 30, 46, 115, 105, 58, 63, 93, 133, 109, 73, 114, 136
step 115 0.159912 0.120218 0.82177 0.263543 0.113831 16, 27, 120, 91, 103, 122, 124, 28, 117, 62, 138, 126
step 116 0.211336 0.143735 1.30904 0.315166 0.132287 4, 84, 10, 40, 57, 49, 21, 94, 121, 123
step 117 0.598735 0.391056 1.10724 1.06888 0.122028 3, 18, 7, 55, 12, 22, 97, 39, 6, 37, 106, 87, 9, 13, 100, 72, 52, 99, 25, 79, 15, 43, 76, 30, 46, 115, 105, 58, 63, 93, 133, 109, 73, 114, 136, 16, 27, 120, 91, 103, 122, 124, 28, 117, 62, 138, 126
step 118 0.119124 0.11508 1.30321 0.122028 0.138096 64, 130, 67
step 119 0.435425 0.284593 1.44209 1.00222 0.134676 5, 78, 80, 24, 89, 116, 53, 132, 131, 68, 90, 8, 61, 29, 45, 119, 128, 11, 38, 32, 48, 77, 108, 98, 101, 41, 44, 81, 95, 56, 83, 110, 69, 36, 47, 75, 113, 134, 35, 74, 50, 23, 33, 42, 104, 96, 86, 125, 26, 71, 14, 54, 66, 65, 129
step 120 0.521526 0.4012 1.13007 1.08289 0.123059 3, 18, 7, 55, 12, 22, 97, 39, 6, 37, 106, 87, 9, 13, 100, 72, 52, 99, 25, 79, 15, 43, 76, 30, 46, 115, 105, 58, 63, 93, 133, 109, 73, 114, 136, 16, 27, 120, 91, 103, 122, 124, 28, 117, 62, 138, 126, 31, 60
step 121 0.728048 0.476747 1.14449 1.29345 0.125448 2, 127, 51, 70, 102, 17, 19, 137, 3, 18, 7, 55, 12, 22, 97, 39, 6, 37, 106, 87, 9, 13, 100, 72, 52, 99, 25, 79, 15, 43, 76, 30, 46, 115, 105, 58, 63, 93, 133, 109, 73, 114, 136, 16, 27, 120, 91, 103, 122, 124, 28, 117, 62, 138, 126, 31, 60
step 122 0.392487 0.473841 1.15256 1.29345 0.125448 2, 127, 51, 70, 102, 17, 19, 137, 3, 18, 7, 55, 12, 22, 97, 39, 6, 37, 106, 87, 9, 13, 100, 72, 52, 99, 25, 79, 15, 43, 76, 30, 46, 115, 105, 58, 63, 93, 133, 109, 73, 114, 136, 16, 27, 120, 91, 103, 122, 124, 28, 117, 62, 138, 126, 31, 60, 88
step 123 0.449042 0.473001 1.15882 1.29345 0.132287 2, 127, 51, 70, 102, 17, 19, 137, 3, 18, 7, 55, 12, 22, 97, 39, 6, 37, 106, 87, 9, 13, 100, 72, 52, 99, 25, 79, 15, 43, 76, 30, 46, 115, 105, 58, 63, 93, 133, 109, 73, 114, 136, 16, 27, 120, 91, 103, 122, 124, 28, 117, 62, 138, 126, 31, 60, 88, 107
step 124 0.781825 0.544352 1.29264 1.65682 0.138096 2, 127, 51, 70, 102, 17, 19, 137, 3, 18, 7, 55, 12, 22, 97, 39, 6, 37, 106, 87, 9, 13, 100, 72, 52, 99, 25, 79, 15, 43, 76, 30, 46, 115, 105, 58, 63, 93, 133, 109, 73, 114, 136, 16, 27, 120, 91, 103, 122, 124, 28, 117, 62, 138, 126, 31, 60, 88, 107, 4, 84, 10, 40, 57, 49, 21, 94, 121, 123
step 125 0.601927 0.295926 1.44608 1.08631 0.147324 5, 78, 80, 24, 89, 116, 53, 132, 131, 68, 90, 8, 61, 29, 45, 119, 128, 11, 38, 32, 48, 77, 108, 98, 101, 41, 44, 81, 95, 56, 83, 110, 69, 36, 47, 75, 113, 134, 35, 74, 50, 23, 33, 42, 104, 96, 86, 125, 26, 71, 14, 54, 66, 65, 129, 111
step 126 0.766519 0.56184 1.33938 1.65682 0.148355 2, 127, 51, 70, 102, 17, 19, 137, 3, 18, 7, 55, 12, 22, 97, 39, 6, 37, 106, 87, 9, 13, 100, 72, 52, 99, 25, 79, 15, 43, 76, 30, 46, 115, 105, 58, 63, 93, 133, 109, 73, 114, 136, 16, 27, 120, 91, 103, 122, 124, 28, 117, 62, 138, 126, 31, 60, 88, 107, 4, 84, 10, 40, 57, 49, 21, 94, 121, 123, 64, 130, 67
step 127 0.144935 0.144935 1.9959 0.144935 0.561283 118, 135
step 128 0.347105 0.297722 1.46352 1.08631 0.568157 5, 78, 80, 24, 89, 116, 53, 132, 131, 68, 90, 8, 61, 29, 45, 119, 128, 11, 38, 32, 48, 77, 108, 98, 101, 41, 44, 81, 95, 56, 83, 110, 69, 36, 47, 75, 113, 134, 35, 74, 50, 23, 33, 42, 104, 96, 86, 125, 26, 71, 14, 54, 66, 65, 129, 111, 20
step 129 0.546575 0.561422 1.34825 1.65682 0.238247 2, 127, 51, 70, 102, 17, 19, 137, 3, 18, 7, 55, 12, 22, 97, 39, 6, 37, 106, 87, 9, 13, 100, 72, 52, 99, 25, 79, 15, 43, 76, 30, 46, 115, 105, 58, 63, 93, 133, 109, 73, 114, 136, 16, 27, 120, 91, 103, 122, 124, 28, 117, 62, 138, 126, 31, 60, 88, 107, 4, 84, 10, 40, 57, 49, 21, 94, 121, 123, 64, 130, 67, 92
step 130 0.209532 0.209532 1.46808 0.209532 0.39138 59, 82
step 131 1.0355 0.574235 1.36504 1.89507 0.274833 2, 127, 51, 70, 102, 17, 19, 137, 3, 18, 7, 55, 12, 22, 97, 39, 6, 37, 106, 87, 9, 13, 100, 72, 52, 99, 25, 79, 15, 43, 76, 30, 46, 115, 105, 58, 63, 93, 133, 109, 73, 114, 136, 16, 27, 120, 91, 103, 122, 124, 28, 117, 62, 138, 126, 31, 60, 88, 107, 4, 84, 10, 40, 57, 49, 21, 94, 121, 123, 64, 130, 67, 92, 112
step 132 1.03976 0.586649 1.38213 1.89507 0.568157 1, 2, 127, 51, 70, 102, 17, 19, 137, 3, 18, 7, 55, 12, 22, 97, 39, 6, 37, 106, 87, 9, 13, 100, 72, 52, 99, 25, 79, 15, 43, 76, 30, 46, 115, 105, 58, 63, 93, 133, 109, 73, 114, 136, 16, 27, 120, 91, 103, 122, 124, 28, 117, 62, 138, 126, 31, 60, 88, 107, 4, 84, 10, 40, 57, 49, 21, 94, 121, 123, 64, 130, 67, 92, 112
step 133 0.483498 0.392176 1.42835 0.575616 0.561283 34, 59, 82
step 134 0.861739 0.64919 1.67072 1.18065 0.611909 34, 59, 82, 118, 135
step 135 1.39162 0.931329 1.75421 2.85325 0.611909 1, 2, 127, 51, 70, 102, 17, 19, 137, 3, 18, 7, 55, 12, 22, 97, 39, 6, 37, 106, 87, 9, 13, 100, 72, 52, 99, 25, 79, 15, 43, 76, 30, 46, 115, 105, 58, 63, 93, 133, 109, 73, 114, 136, 16, 27, 120, 91, 103, 122, 124, 28, 117, 62, 138, 126, 31, 60, 88, 107, 4, 84, 10, 40, 57, 49, 21, 94, 121, 123, 64, 130, 67, 92, 112, 5, 78, 80, 24, 89, 116, 53, 132, 131, 68, 90, 8, 61, 29, 45, 119, 128, 11, 38, 32, 48, 77, 108, 98, 101, 41, 44, 81, 95, 56, 83, 110, 69, 36, 47, 75, 113, 134, 35, 74, 50, 23, 33, 42, 104, 96, 86, 125, 26, 71, 14, 54, 66, 65, 129, 111, 20
step 136 1.67595 0.983779 2.103 3.35236 0.678568 1, 2, 127, 51, 70, 102, 17, 19, 137, 3, 18, 7, 55, 12, 22, 97, 39, 6, 37, 106, 87, 9, 13, 100, 72, 52, 99, 25, 79, 15, 43, 76, 30, 46, 115, 105, 58, 63, 93, 133, 109, 73, 114, 136, 16, 27, 120, 91, 103, 122, 124, 28, 117, 62, 138, 126, 31, 60, 88, 107, 4, 84, 10, 40, 57, 49, 21, 94, 121, 123, 64, 130, 67, 92, 112, 5, 78, 80, 24, 89, 116, 53, 132, 131, 68, 90, 8, 61, 29, 45, 119, 128, 11, 38, 32, 48, 77, 108, 98, 101, 41, 44, 81, 95, 56, 83, 110, 69, 36, 47, 75, 113, 134, 35, 74, 50, 23, 33, 42, 104, 96, 86, 125, 26, 71, 14, 54, 66, 65, 129, 111, 20, 34, 59, 82, 118, 135
step 137 2.103 1 3.35236 1, 2, 127, 51, 70, 102, 17, 19, 137, 3, 18, 7, 55, 12, 22, 97, 39, 6, 37, 106, 87, 9, 13, 100, 72, 52, 99, 25, 79, 15, 43, 76, 30, 46, 115, 105, 58, 63, 93, 133, 109, 73, 114, 136, 16, 27, 120, 91, 103, 122, 124, 28, 117, 62, 138, 126, 31, 60, 88, 107, 4, 84, 10, 40, 57, 49, 21, 94, 121, 123, 64, 130, 67, 92, 112, 5, 78, 80, 24, 89, 116, 53, 132, 131, 68, 90, 8, 61, 29, 45, 119, 128, 11, 38, 32, 48, 77, 108, 98, 101, 41, 44, 81, 95, 56, 83, 110, 69, 36, 47, 75, 113, 134, 35, 74, 50, 23, 33, 42, 104, 96, 86, 125, 26, 71, 14, 54, 66, 65, 129, 111, 20, 34, 59, 82, 118, 135, 85
dendrogram scale: child cluster distance
1 2 127 51 70 102 17 19 137 3 18 7 55 12 22 97 39 6 37 106 87 9 13 100 72 52 99 25 79 15 43 76 30 46 115 105 58 63 93 133 109 73 114 136 16 27 120 91 103 122 124 28 117 62 138 126 31 60 88 107 4 84 10 40 57 49 21 94 121 123 64 130 67 92 112 5 78 80 24 89 116 53 132 131 68 90 8 61 29 45 119 128 11 38 32 48 77 108 98 101 41 44 81 95 56 83 110 69 36 47 75 113 134 35 74 50 23 33 42 104 96 86 125 26 71 14 54 66 65 129 111 20 34 59 82 118 135 85
1.03976 0.0379436 0.0736618 0.021876 0.113912 0.130301 0.199508 0.146153 0.728048 0.0379436 0.0627238 0 0.09699 0.196735 0.0379436 0.0822111 0.370684 0.0954834 0.0471717 0.0615295 0.154421 0.0505915 0.0252957 0.0951397 0.178217 0.200689 0.334707 0.347239 0.220267 0.0656281 0.0834055 0.291649 0.0379436 0.0753717 0.0808994 0.106136 0.196191 0.0345239 0.061014 0.0713276 0.0972477 0.233774 0.428133 0.598735 0.0440957 0.0126479 0.0282 0.0739196 0.0126479 0.0513877 0.167784 0.0252957 0.0782759 0.0252957 0.159912 0.521526 0.0563999 0.392487 0.449042 0.781825 0.0909238 0.211336 0.0636919 0.0345239 0.0425577 0.132287 0.0126479 0.120834 0.0724675 0.766519 0.106991 0.119124 0.546575 1.0355 1.39162 0.043752 0.0909238 0.114053 0 0.0345239 0.0410196 0.11988 0.170781 0.170795 0.0656281 0.263482 0.021876 0.0362337 0.111207 0.0661435 0.0379436 0.213303 0.021876 0.0454619 0.047968 0.0704999 0.0559222 0.0749736 0.0678767 0.130293 0 0.0408478 0.0126479 0.0583675 0.0345239 0.0252957 0.0862301 0.118571 0.0471717 0.132286 0.0408478 0.0126479 0.149733 0.153907 0.224119 0.404658 0.0252957 0.0471717 0.0693914 0.0768238 0.0994026 0.0505915 0.129015 0.137668 0.435425 0.0379436 0.0787914 0.143451 0.182281 0.601927 0.347105 1.67595 0.483498 0.209532 0.861739 0.144935 2.103
1 ___________________________________________________________________________________________________
| | | |
2 _________________________________________________| | | |
| | | | | | | | | |
127 _| | | | | | | | | |
| | | | | | | | |
51 ___| | | | | | | | |
| | | | | | | | |
70 _| | | | | | | | |
| | | | | | | |
102 _____| | | | | | | |
| | | | | | | |
17 _____| | | | | | | |
| | | | | | |
19 _________| | | | | | |
| | | | | | |
137 _____| | | | | | |
| | | | | |
3 _________________________________| | | | | |
| | | | | | | | | | |
18 _| | | | | | | | | | |
| | | | | | | | | | |
7 _| | | | | | | | | | |
| | | | | | | | | | |
55 | | | | | | | | | | |
| | | | | | | | | |
12 ___| | | | | | | | | |
| | | | | | | | |
22 _________| | | | | | | | |
| | | | | | | | | |
97 _| | | | | | | | | |
| | | | | | | | |
39 ___| | | | | | | | |
| | | | | | | |
6 _________________| | | | | | | |
| | | | | | | | | | |
37 ___| | | | | | | | | | |
| | | | | | | | | | |
106 _| | | | | | | | | | |
| | | | | | | | | | |
87 _| | | | | | | | | | |
| | | | | | | | | |
9 _______| | | | | | | | | |
| | | | | | | | | | | |
13 _| | | | | | | | | | | |
| | | | | | | | | | | |
100 _| | | | | | | | | | | |
| | | | | | | | | | |
72 ___| | | | | | | | | | |
| | | | | | | | | |
52 _______| | | | | | | | | |
| | | | | | | | |
99 _________| | | | | | | | |
| | | | | | | |
25 _______________| | | | | | | |
| | | | | | | |
79 _______________| | | | | | | |
| | | | | | | | |
15 _________| | | | | | | | |
| | | | | | | | |
43 ___| | | | | | | | |
| | | | | | | | |
76 ___| | | | | | | | |
| | | | | | | |
30 _____________| | | | | | | |
| | | | | | | | | | | |
46 _| | | | | | | | | | | |
| | | | | | | | | | |
115 ___| | | | | | | | | | |
| | | | | | | | | | |
105 ___| | | | | | | | | | |
| | | | | | | | | |
58 _____| | | | | | | | | |
| | | | | | | | |
63 _________| | | | | | | | |
| | | | | | | | | |
93 _| | | | | | | | | |
| | | | | | | | | |
133 _| | | | | | | | | |
| | | | | | | | |
109 ___| | | | | | | | |
| | | | | | | | |
73 ___| | | | | | | | |
| | | | | | | |
114 ___________| | | | | | | |
| | | | | | |
136 ___________________| | | | | | |
| | | | | |
16 ___________________________| | | | | |
| | | | | | | | |
27 _| | | | | | | | |
| | | | | | | | | |
120 || | | | | | | | |
| | | | | | | | |
91 _| | | | | | | | |
| | | | | | | |
103 ___| | | | | | | |
| | | | | | | | |
122 || | | | | | | |
| | | | | | | |
124 _| | | | | | | |
| | | | | | |
28 _______| | | | | | |
| | | | | | | | |
117 _| | | | | | | | |
| | | | | | | |
62 ___| | | | | | | |
| | | | | | | |
138 _| | | | | | | |
| | | | | | |
126 _______| | | | | | |
| | | | | |
31 _______________________| | | | | |
| | | | | | | |
60 _| | | | | | | |
| | | | | | |
88 _________________| | | | | | |
| | | | | |
107 _____________________| | | | | |
| | | | |
4 _____________________________________| | | | |
| | | | | | |
84 ___| | | | | | |
| | | | | |
10 _________| | | | | |
| | | | | | |
40 ___| | | | | | |
| | | | | | |
57 _| | | | | | |
| | | | | | |
49 _| | | | | | |
| | | | | |
21 _____| | | | | |
| | | | | | |
94 | | | | | | |
| | | | | |
121 _____| | | | | |
| | | | | |
123 ___| | | | | |
| | | | |
64 ___________________________________| | | | |
| | | | | |
130 _____| | | | | |
| | | | | |
67 _____| | | | | |
| | | | |
92 _________________________| | | | |
| | | |
112 _________________________________________________| | | |
| | |
5 _________________________________________________________________| | |
| | | | | | | | |
78 _| | | | | | | | |
| | | | | | | |
80 ___| | | | | | | |
| | | | | | |
24 _____| | | | | | |
|| | | | | | | |
89 || | | | | | | |
| | | | | | | |
116 _| | | | | | | |
| | | | | | | |
53 _| | | | | | | |
| | | | | | |
132 _____| | | | | | |
| | | | | |
131 _______| | | | | |
| | | | | |
68 _______| | | | | |
| | | | | |
90 ___| | | | | |
| | | | |
8 ___________| | | | |
| | | | | | |
61 _| | | | | | |
| | | | | | |
29 _| | | | | | |
| | | | | |
45 _____| | | | | |
| | | | | |
119 ___| | | | | |
| | | | | |
128 _| | | | | |
| | | | |
11 _________| | | | |
| | | | | | | | |
38 _| | | | | | | | |
| | | | | | | | |
32 _| | | | | | | | |
| | | | | | | | |
48 _| | | | | | | | |
| | | | | | | |
77 ___| | | | | | | |
| | | | | | | | |
108 _| | | | | | | | |
| | | | | | | |
98 ___| | | | | | | |
| | | | | | | |
101 ___| | | | | | | |
| | | | | | |
41 _____| | | | | | |
|| | | | | | | | |
44 || | | | | | | | |
| | | | | | | | |
81 _| | | | | | | | |
| | | | | | | | | |
95 || | | | | | | | |
| | | | | | | | |
56 _| | | | | | | | |
| | | | | | | | |
83 _| | | | | | | | |
| | | | | | | | |
110 _| | | | | | | | |
| | | | | | | |
69 ___| | | | | | | |
| | | | | | |
36 _____| | | | | | |
| | | | | | | |
47 _| | | | | | | |
| | | | | | |
75 _____| | | | | | |
| | | | | | |
113 _| | | | | | |
| | | | | | |
134 | | | | | | |
| | | | | |
35 _______| | | | | |
| | | | | |
74 _______| | | | | |
| | | | |
50 _________| | | | |
| | | |
23 ___________________| | | |
| | | | | | |
33 _| | | | | | |
| | | | | | |
42 _| | | | | | |
| | | | | |
104 ___| | | | | |
| | | | | |
96 ___| | | | | |
| | | | | |
86 ___| | | | | |
| | | | | |
125 _| | | | | |
| | | | |
26 _____| | | | |
| | | | |
71 _____| | | | |
| | | |
14 ___________________| | | |
| | | | | | |
54 _| | | | | | |
| | | | | |
66 ___| | | | | |
| | | | |
65 _____| | | | |
| | | |
129 _______| | | |
| | |
111 ___________________________| | |
| | |
20 _______________| | |
| |
34 _______________________________________________________________________________| |
| | |
59 _____________________| | |
| | |
82 _________| | |
| |
118 _______________________________________| |
| |
135 _____| |
|
85 ___________________________________________________________________________________________________|
child cluster distance scale coefficient: 0.943282
diameter scale coefficient: 0.940673
Hierarchical clustering and dendrogram using a divise algorithm#
[13]:
clust3 = Clustering(matrix, "Hierarchy", "Divisive")
print(clust3)
138 vectors
| child cluster distance | within-cluster distance | between-cluster distance | diameter | separation | composition
step 1 0 0 0.845491 0 0.0563999 7, 55
step 2 0 0 0.883565 0 0.0345239 24, 89
step 3 0 0 0.911651 0 0.0345239 41, 44
step 4 0.0126479 0.0126479 1.18625 0.0126479 0.0782759 21, 94
step 5 0.0126479 0.0126479 0.760368 0.0126479 0.021876 27, 120
step 6 0.0126479 0.0126479 0.913273 0.0126479 0.0345239 81, 95
step 7 0.0126479 0.0126479 0.762643 0.0126479 0.0345239 103, 122
step 8 0.0126479 0.0126479 1.0078 0.0126479 0.0345239 113, 134
step 9 0.021876 0.021876 1.08646 0.021876 0.0252957 8, 61
step 10 0.021876 0.021876 0.967306 0.021876 0.0345239 11, 38
step 11 0.0282 0.0230159 0.765583 0.0345239 0.0252957 27, 120, 91
step 12 0.021876 0.021876 0.868665 0.021876 0.0563999 51, 70
step 13 0.0362337 0.0314478 1.09889 0.0471717 0.0471717 8, 61, 29
step 14 0.0252957 0.0252957 0.921014 0.0252957 0.0379436 13, 100
step 15 0.0440957 0.0335558 0.77085 0.0598196 0.0345239 16, 27, 120, 91
step 16 0.0252957 0.0252957 1.2527 0.0252957 0.0345239 23, 33
step 17 0.0252957 0.0252957 0.775549 0.0252957 0.0656281 28, 117
step 18 0.0252957 0.0252957 0.79839 0.0252957 0.0656281 62, 138
step 19 0.0252957 0.0252957 0.890767 0.0252957 0.0345239 83, 110
step 20 0.0454619 0.0375999 0.968891 0.0563999 0.0345239 11, 38, 32
step 21 0.0739196 0.0536893 0.78211 0.106991 0.0345239 16, 27, 120, 91, 103, 122
step 22 0.0471717 0.0398797 1.24669 0.0598196 0.0379436 23, 33, 42
step 23 0.0345239 0.0230159 0.887222 0.0345239 0.0379436 24, 89, 116
step 24 0.047968 0.042784 0.968338 0.0656281 0.0345239 11, 38, 32, 48
step 25 0.0704999 0.0538703 0.981483 0.100152 0.0379436 11, 38, 32, 48, 77
step 26 0.0345239 0.0345239 1.23769 0.0345239 0.0379436 40, 57
step 27 0.0408478 0.0293399 0.925471 0.0471717 0.0379436 41, 44, 81, 95
step 28 0.0345239 0.0314478 0.899478 0.0345239 0.0379436 56, 83, 110
step 29 0.0345239 0.0345239 0.938001 0.0345239 0.043752 63, 93
step 30 0.0408478 0.0314478 1.00594 0.0471717 0.0505915 75, 113, 134
step 31 0.0513877 0.0530317 0.787684 0.106991 0.0656281 16, 27, 120, 91, 103, 122, 124
step 32 0.0379436 0.0379436 0.855993 0.0379436 0.0563999 2, 127
step 33 0.0379436 0.0379436 0.831399 0.0379436 0.0563999 3, 18
step 34 0.0505915 0.0421595 0.937767 0.0632393 0.0656281 9, 13, 100
step 35 0.0379436 0.0379436 0.87456 0.0379436 0.0598196 14, 54
step 36 0.0379436 0.0379436 0.779505 0.0379436 0.0632393 22, 97
step 37 0.0410196 0.0320178 0.894159 0.0471717 0.0690478 24, 89, 116, 53
step 38 0.0379436 0.0379436 0.855449 0.0379436 0.0563999 30, 46
step 39 0.0559222 0.0545543 0.984221 0.100152 0.0379436 11, 38, 32, 48, 77, 108
step 40 0.0749736 0.0603884 0.996551 0.106991 0.0379436 11, 38, 32, 48, 77, 108, 98
step 41 0.0678767 0.0622605 1.0035 0.106991 0.043752 11, 38, 32, 48, 77, 108, 98, 101
step 42 0.0583675 0.0462282 0.936685 0.0851153 0.043752 41, 44, 81, 95, 56, 83, 110
step 43 0.0693914 0.0546356 1.239 0.0977632 0.043752 23, 33, 42, 104
step 44 0.0425577 0.0398797 1.25903 0.0471717 0.0563999 40, 57, 49
step 45 0.0379436 0.0379436 1.07673 0.0379436 0.0471717 119, 128
step 46 0.043752 0.043752 0.947424 0.043752 0.0690478 5, 78
step 47 0.130293 0.0953383 1.0233 0.219791 0.043752 11, 38, 32, 48, 77, 108, 98, 101, 41, 44, 81, 95, 56, 83, 110
step 48 0.0768238 0.0635109 1.23707 0.103572 0.0563999 23, 33, 42, 104, 96
step 49 0.0862301 0.0941997 1.03095 0.219791 0.0471717 11, 38, 32, 48, 77, 108, 98, 101, 41, 44, 81, 95, 56, 83, 110, 69
step 50 0.061014 0.0521839 0.933878 0.0782759 0.0505915 63, 93, 133
step 51 0.0471717 0.0471717 0.95163 0.0471717 0.0471717 36, 47
step 52 0.0471717 0.0471717 0.995691 0.0471717 0.0598196 37, 106
step 53 0.0661435 0.0567436 1.07975 0.0851153 0.0471717 45, 119, 128
step 54 0.118571 0.0989895 1.048 0.219791 0.0505915 11, 38, 32, 48, 77, 108, 98, 101, 41, 44, 81, 95, 56, 83, 110, 69, 36, 47
step 55 0.111207 0.0843627 1.11155 0.179459 0.0656281 8, 61, 29, 45, 119, 128
step 56 0.132286 0.106587 1.08131 0.248507 0.0563999 11, 38, 32, 48, 77, 108, 98, 101, 41, 44, 81, 95, 56, 83, 110, 69, 36, 47, 75, 113, 134
step 57 0.0713276 0.0617558 0.949872 0.103572 0.0563999 63, 93, 133, 109
step 58 0.0505915 0.0505915 1.20298 0.0505915 0.0563999 86, 125
step 59 0.0627238 0.0481398 0.850023 0.0690478 0.0782759 3, 18, 7, 55
step 60 0.0636919 0.0517858 1.27837 0.0690478 0.0816956 10, 40, 57, 49
step 61 0.0753717 0.0628957 0.857606 0.0943435 0.0598196 30, 46, 115
step 62 0.0563999 0.0563999 1.06846 0.0563999 0.122028 31, 60
step 63 0.149733 0.110509 1.08732 0.250895 0.0656281 11, 38, 32, 48, 77, 108, 98, 101, 41, 44, 81, 95, 56, 83, 110, 69, 36, 47, 75, 113, 134, 35
step 64 0.0972477 0.0759525 0.962431 0.134676 0.0782759 63, 93, 133, 109, 73
step 65 0.0736618 0.0590778 0.8741 0.0909238 0.0724675 2, 127, 51, 70
step 66 0.0994026 0.079987 1.25177 0.163391 0.0690478 23, 33, 42, 104, 96, 86, 125
step 67 0.0787914 0.0651755 0.884129 0.0977632 0.0909238 14, 54, 66
step 68 0.0615295 0.0567436 1.01765 0.0632393 0.0690478 37, 106, 87
step 69 0.0808994 0.0718975 0.867262 0.110411 0.0782759 30, 46, 115, 105
step 70 0.0822111 0.0674553 0.790057 0.101183 0.088535 22, 97, 39
step 71 0.0656281 0.0656281 0.914738 0.0656281 0.0724675 15, 43
step 72 0.0782759 0.0606159 0.797547 0.0909238 0.0656281 28, 117, 62, 138
step 73 0.167784 0.112279 0.816318 0.263543 0.113831 16, 27, 120, 91, 103, 122, 124, 28, 117, 62, 138
step 74 0.0656281 0.0656281 0.861875 0.0656281 0.0724675 68, 90
step 75 0.0951397 0.0686496 0.932222 0.128867 0.0690478 9, 13, 100, 72
step 76 0.213303 0.145368 1.16847 0.358918 0.0724675 8, 61, 29, 45, 119, 128, 11, 38, 32, 48, 77, 108, 98, 101, 41, 44, 81, 95, 56, 83, 110, 69, 36, 47, 75, 113, 134, 35
step 77 0.0909238 0.0751999 0.940275 0.1128 0.0690478 5, 78, 80
step 78 0.0954834 0.0761135 1.0311 0.132287 0.0690478 6, 37, 106, 87
step 79 0.154421 0.119261 1.00711 0.261154 0.0782759 6, 37, 106, 87, 9, 13, 100, 72
step 80 0.114053 0.0850638 0.934943 0.1692 0.0690478 5, 78, 80, 24, 89, 116, 53
step 81 0.129015 0.0922439 1.27621 0.172619 0.0690478 23, 33, 42, 104, 96, 86, 125, 26
step 82 0.137668 0.102338 1.29949 0.191076 0.0816956 23, 33, 42, 104, 96, 86, 125, 26, 71
step 83 0.11988 0.0937678 0.936256 0.209532 0.0690478 5, 78, 80, 24, 89, 116, 53, 132
step 84 0.170781 0.110882 0.937799 0.27858 0.0724675 5, 78, 80, 24, 89, 116, 53, 132, 131
step 85 0.0834055 0.0774797 0.933912 0.0943435 0.0977632 15, 43, 76
step 86 0.153907 0.145957 1.17948 0.358918 0.0758872 8, 61, 29, 45, 119, 128, 11, 38, 32, 48, 77, 108, 98, 101, 41, 44, 81, 95, 56, 83, 110, 69, 36, 47, 75, 113, 134, 35, 74
step 87 0.113912 0.0810117 0.87747 0.163391 0.0782759 2, 127, 51, 70, 102
step 88 0.170795 0.129667 0.942781 0.322332 0.0758872 5, 78, 80, 24, 89, 116, 53, 132, 131, 68, 90
step 89 0.0724675 0.0724675 1.15619 0.0724675 0.0782759 121, 123
step 90 0.263482 0.192873 1.24421 0.591357 0.0782759 5, 78, 80, 24, 89, 116, 53, 132, 131, 68, 90, 8, 61, 29, 45, 119, 128, 11, 38, 32, 48, 77, 108, 98, 101, 41, 44, 81, 95, 56, 83, 110, 69, 36, 47, 75, 113, 134, 35, 74
step 91 0.130301 0.0974413 0.881249 0.216371 0.0875041 2, 127, 51, 70, 102, 17
step 92 0.09699 0.0676799 0.852929 0.10938 0.088535 3, 18, 7, 55, 12
step 93 0.120834 0.0947416 1.1869 0.163391 0.0816956 21, 94, 121, 123
step 94 0.106136 0.0855931 0.86533 0.144935 0.0782759 30, 46, 115, 105, 58
step 95 0.224119 0.194397 1.25595 0.591357 0.0816956 5, 78, 80, 24, 89, 116, 53, 132, 131, 68, 90, 8, 61, 29, 45, 119, 128, 11, 38, 32, 48, 77, 108, 98, 101, 41, 44, 81, 95, 56, 83, 110, 69, 36, 47, 75, 113, 134, 35, 74, 50
step 96 0.178217 0.132363 1.02524 0.314135 0.0909238 6, 37, 106, 87, 9, 13, 100, 72, 52
step 97 0.196191 0.144894 0.941916 0.326783 0.0851153 30, 46, 115, 105, 58, 63, 93, 133, 109, 73
step 98 0.404658 0.255027 1.41022 0.864128 0.119639 5, 78, 80, 24, 89, 116, 53, 132, 131, 68, 90, 8, 61, 29, 45, 119, 128, 11, 38, 32, 48, 77, 108, 98, 101, 41, 44, 81, 95, 56, 83, 110, 69, 36, 47, 75, 113, 134, 35, 74, 50, 23, 33, 42, 104, 96, 86, 125, 26, 71
step 99 0.132287 0.106991 1.26649 0.176039 0.113831 10, 40, 57, 49, 21, 94, 121, 123
step 100 0.233774 0.161054 0.958578 0.411898 0.0977632 30, 46, 115, 105, 58, 63, 93, 133, 109, 73, 114
step 101 0.199508 0.126603 0.893597 0.303876 0.0943435 2, 127, 51, 70, 102, 17, 19
step 102 0.196735 0.136793 0.847374 0.280642 0.0943435 3, 18, 7, 55, 12, 22, 97, 39
step 103 0.0909238 0.0909238 1.34261 0.0909238 0.113831 4, 84
step 104 0.200689 0.146028 1.0366 0.314135 0.0943435 6, 37, 106, 87, 9, 13, 100, 72, 52, 99
step 105 0.143451 0.104313 0.891958 0.188687 0.101183 14, 54, 66, 65
step 106 0.370684 0.261805 0.994816 0.667244 0.0943435 3, 18, 7, 55, 12, 22, 97, 39, 6, 37, 106, 87, 9, 13, 100, 72, 52, 99
step 107 0.334707 0.269479 1.00892 0.667244 0.0977632 3, 18, 7, 55, 12, 22, 97, 39, 6, 37, 106, 87, 9, 13, 100, 72, 52, 99, 25
step 108 0.146153 0.131491 0.891046 0.303876 0.123059 2, 127, 51, 70, 102, 17, 19, 137
step 109 0.347239 0.277255 1.00693 0.667244 0.0977632 3, 18, 7, 55, 12, 22, 97, 39, 6, 37, 106, 87, 9, 13, 100, 72, 52, 99, 25, 79
step 110 0.220267 0.261371 1.03144 0.667244 0.0977632 3, 18, 7, 55, 12, 22, 97, 39, 6, 37, 106, 87, 9, 13, 100, 72, 52, 99, 25, 79, 15, 43, 76
step 111 0.291649 0.265191 1.10851 0.667244 0.110411 3, 18, 7, 55, 12, 22, 97, 39, 6, 37, 106, 87, 9, 13, 100, 72, 52, 99, 25, 79, 15, 43, 76, 30, 46, 115, 105, 58, 63, 93, 133, 109, 73, 114
step 112 0.182281 0.135501 0.896034 0.28987 0.119639 14, 54, 66, 65, 129
step 113 0.106991 0.106991 1.32714 0.106991 0.11622 64, 130
step 114 0.428133 0.274502 1.10848 0.726032 0.113831 3, 18, 7, 55, 12, 22, 97, 39, 6, 37, 106, 87, 9, 13, 100, 72, 52, 99, 25, 79, 15, 43, 76, 30, 46, 115, 105, 58, 63, 93, 133, 109, 73, 114, 136
step 115 0.159912 0.120218 0.82177 0.263543 0.113831 16, 27, 120, 91, 103, 122, 124, 28, 117, 62, 138, 126
step 116 0.211336 0.143735 1.30904 0.315166 0.132287 4, 84, 10, 40, 57, 49, 21, 94, 121, 123
step 117 0.598735 0.391056 1.10724 1.06888 0.122028 3, 18, 7, 55, 12, 22, 97, 39, 6, 37, 106, 87, 9, 13, 100, 72, 52, 99, 25, 79, 15, 43, 76, 30, 46, 115, 105, 58, 63, 93, 133, 109, 73, 114, 136, 16, 27, 120, 91, 103, 122, 124, 28, 117, 62, 138, 126
step 118 0.119124 0.11508 1.30321 0.122028 0.138096 64, 130, 67
step 119 0.435425 0.284593 1.44209 1.00222 0.134676 5, 78, 80, 24, 89, 116, 53, 132, 131, 68, 90, 8, 61, 29, 45, 119, 128, 11, 38, 32, 48, 77, 108, 98, 101, 41, 44, 81, 95, 56, 83, 110, 69, 36, 47, 75, 113, 134, 35, 74, 50, 23, 33, 42, 104, 96, 86, 125, 26, 71, 14, 54, 66, 65, 129
step 120 0.521526 0.4012 1.13007 1.08289 0.123059 3, 18, 7, 55, 12, 22, 97, 39, 6, 37, 106, 87, 9, 13, 100, 72, 52, 99, 25, 79, 15, 43, 76, 30, 46, 115, 105, 58, 63, 93, 133, 109, 73, 114, 136, 16, 27, 120, 91, 103, 122, 124, 28, 117, 62, 138, 126, 31, 60
step 121 0.728048 0.476747 1.14449 1.29345 0.125448 2, 127, 51, 70, 102, 17, 19, 137, 3, 18, 7, 55, 12, 22, 97, 39, 6, 37, 106, 87, 9, 13, 100, 72, 52, 99, 25, 79, 15, 43, 76, 30, 46, 115, 105, 58, 63, 93, 133, 109, 73, 114, 136, 16, 27, 120, 91, 103, 122, 124, 28, 117, 62, 138, 126, 31, 60
step 122 0.392487 0.473841 1.15256 1.29345 0.125448 2, 127, 51, 70, 102, 17, 19, 137, 3, 18, 7, 55, 12, 22, 97, 39, 6, 37, 106, 87, 9, 13, 100, 72, 52, 99, 25, 79, 15, 43, 76, 30, 46, 115, 105, 58, 63, 93, 133, 109, 73, 114, 136, 16, 27, 120, 91, 103, 122, 124, 28, 117, 62, 138, 126, 31, 60, 88
step 123 0.449042 0.473001 1.15882 1.29345 0.132287 2, 127, 51, 70, 102, 17, 19, 137, 3, 18, 7, 55, 12, 22, 97, 39, 6, 37, 106, 87, 9, 13, 100, 72, 52, 99, 25, 79, 15, 43, 76, 30, 46, 115, 105, 58, 63, 93, 133, 109, 73, 114, 136, 16, 27, 120, 91, 103, 122, 124, 28, 117, 62, 138, 126, 31, 60, 88, 107
step 124 0.781825 0.544352 1.29264 1.65682 0.138096 2, 127, 51, 70, 102, 17, 19, 137, 3, 18, 7, 55, 12, 22, 97, 39, 6, 37, 106, 87, 9, 13, 100, 72, 52, 99, 25, 79, 15, 43, 76, 30, 46, 115, 105, 58, 63, 93, 133, 109, 73, 114, 136, 16, 27, 120, 91, 103, 122, 124, 28, 117, 62, 138, 126, 31, 60, 88, 107, 4, 84, 10, 40, 57, 49, 21, 94, 121, 123
step 125 0.601927 0.295926 1.44608 1.08631 0.147324 5, 78, 80, 24, 89, 116, 53, 132, 131, 68, 90, 8, 61, 29, 45, 119, 128, 11, 38, 32, 48, 77, 108, 98, 101, 41, 44, 81, 95, 56, 83, 110, 69, 36, 47, 75, 113, 134, 35, 74, 50, 23, 33, 42, 104, 96, 86, 125, 26, 71, 14, 54, 66, 65, 129, 111
step 126 0.766519 0.56184 1.33938 1.65682 0.148355 2, 127, 51, 70, 102, 17, 19, 137, 3, 18, 7, 55, 12, 22, 97, 39, 6, 37, 106, 87, 9, 13, 100, 72, 52, 99, 25, 79, 15, 43, 76, 30, 46, 115, 105, 58, 63, 93, 133, 109, 73, 114, 136, 16, 27, 120, 91, 103, 122, 124, 28, 117, 62, 138, 126, 31, 60, 88, 107, 4, 84, 10, 40, 57, 49, 21, 94, 121, 123, 64, 130, 67
step 127 0.144935 0.144935 1.9959 0.144935 0.561283 118, 135
step 128 0.347105 0.297722 1.46352 1.08631 0.568157 5, 78, 80, 24, 89, 116, 53, 132, 131, 68, 90, 8, 61, 29, 45, 119, 128, 11, 38, 32, 48, 77, 108, 98, 101, 41, 44, 81, 95, 56, 83, 110, 69, 36, 47, 75, 113, 134, 35, 74, 50, 23, 33, 42, 104, 96, 86, 125, 26, 71, 14, 54, 66, 65, 129, 111, 20
step 129 0.546575 0.561422 1.34825 1.65682 0.238247 2, 127, 51, 70, 102, 17, 19, 137, 3, 18, 7, 55, 12, 22, 97, 39, 6, 37, 106, 87, 9, 13, 100, 72, 52, 99, 25, 79, 15, 43, 76, 30, 46, 115, 105, 58, 63, 93, 133, 109, 73, 114, 136, 16, 27, 120, 91, 103, 122, 124, 28, 117, 62, 138, 126, 31, 60, 88, 107, 4, 84, 10, 40, 57, 49, 21, 94, 121, 123, 64, 130, 67, 92
step 130 0.209532 0.209532 1.46808 0.209532 0.39138 59, 82
step 131 1.0355 0.574235 1.36504 1.89507 0.274833 2, 127, 51, 70, 102, 17, 19, 137, 3, 18, 7, 55, 12, 22, 97, 39, 6, 37, 106, 87, 9, 13, 100, 72, 52, 99, 25, 79, 15, 43, 76, 30, 46, 115, 105, 58, 63, 93, 133, 109, 73, 114, 136, 16, 27, 120, 91, 103, 122, 124, 28, 117, 62, 138, 126, 31, 60, 88, 107, 4, 84, 10, 40, 57, 49, 21, 94, 121, 123, 64, 130, 67, 92, 112
step 132 1.03976 0.586649 1.38213 1.89507 0.568157 1, 2, 127, 51, 70, 102, 17, 19, 137, 3, 18, 7, 55, 12, 22, 97, 39, 6, 37, 106, 87, 9, 13, 100, 72, 52, 99, 25, 79, 15, 43, 76, 30, 46, 115, 105, 58, 63, 93, 133, 109, 73, 114, 136, 16, 27, 120, 91, 103, 122, 124, 28, 117, 62, 138, 126, 31, 60, 88, 107, 4, 84, 10, 40, 57, 49, 21, 94, 121, 123, 64, 130, 67, 92, 112
step 133 0.483498 0.392176 1.42835 0.575616 0.561283 34, 59, 82
step 134 0.861739 0.64919 1.67072 1.18065 0.611909 34, 59, 82, 118, 135
step 135 1.39162 0.931329 1.75421 2.85325 0.611909 1, 2, 127, 51, 70, 102, 17, 19, 137, 3, 18, 7, 55, 12, 22, 97, 39, 6, 37, 106, 87, 9, 13, 100, 72, 52, 99, 25, 79, 15, 43, 76, 30, 46, 115, 105, 58, 63, 93, 133, 109, 73, 114, 136, 16, 27, 120, 91, 103, 122, 124, 28, 117, 62, 138, 126, 31, 60, 88, 107, 4, 84, 10, 40, 57, 49, 21, 94, 121, 123, 64, 130, 67, 92, 112, 5, 78, 80, 24, 89, 116, 53, 132, 131, 68, 90, 8, 61, 29, 45, 119, 128, 11, 38, 32, 48, 77, 108, 98, 101, 41, 44, 81, 95, 56, 83, 110, 69, 36, 47, 75, 113, 134, 35, 74, 50, 23, 33, 42, 104, 96, 86, 125, 26, 71, 14, 54, 66, 65, 129, 111, 20
step 136 1.67595 0.983779 2.103 3.35236 0.678568 1, 2, 127, 51, 70, 102, 17, 19, 137, 3, 18, 7, 55, 12, 22, 97, 39, 6, 37, 106, 87, 9, 13, 100, 72, 52, 99, 25, 79, 15, 43, 76, 30, 46, 115, 105, 58, 63, 93, 133, 109, 73, 114, 136, 16, 27, 120, 91, 103, 122, 124, 28, 117, 62, 138, 126, 31, 60, 88, 107, 4, 84, 10, 40, 57, 49, 21, 94, 121, 123, 64, 130, 67, 92, 112, 5, 78, 80, 24, 89, 116, 53, 132, 131, 68, 90, 8, 61, 29, 45, 119, 128, 11, 38, 32, 48, 77, 108, 98, 101, 41, 44, 81, 95, 56, 83, 110, 69, 36, 47, 75, 113, 134, 35, 74, 50, 23, 33, 42, 104, 96, 86, 125, 26, 71, 14, 54, 66, 65, 129, 111, 20, 34, 59, 82, 118, 135
step 137 2.103 1 3.35236 1, 2, 127, 51, 70, 102, 17, 19, 137, 3, 18, 7, 55, 12, 22, 97, 39, 6, 37, 106, 87, 9, 13, 100, 72, 52, 99, 25, 79, 15, 43, 76, 30, 46, 115, 105, 58, 63, 93, 133, 109, 73, 114, 136, 16, 27, 120, 91, 103, 122, 124, 28, 117, 62, 138, 126, 31, 60, 88, 107, 4, 84, 10, 40, 57, 49, 21, 94, 121, 123, 64, 130, 67, 92, 112, 5, 78, 80, 24, 89, 116, 53, 132, 131, 68, 90, 8, 61, 29, 45, 119, 128, 11, 38, 32, 48, 77, 108, 98, 101, 41, 44, 81, 95, 56, 83, 110, 69, 36, 47, 75, 113, 134, 35, 74, 50, 23, 33, 42, 104, 96, 86, 125, 26, 71, 14, 54, 66, 65, 129, 111, 20, 34, 59, 82, 118, 135, 85
dendrogram scale: child cluster distance
1 2 127 51 70 102 17 19 137 3 18 7 55 12 22 97 39 6 37 106 87 9 13 100 72 52 99 25 79 15 43 76 30 46 115 105 58 63 93 133 109 73 114 136 16 27 120 91 103 122 124 28 117 62 138 126 31 60 88 107 4 84 10 40 57 49 21 94 121 123 64 130 67 92 112 5 78 80 24 89 116 53 132 131 68 90 8 61 29 45 119 128 11 38 32 48 77 108 98 101 41 44 81 95 56 83 110 69 36 47 75 113 134 35 74 50 23 33 42 104 96 86 125 26 71 14 54 66 65 129 111 20 34 59 82 118 135 85
1.03976 0.0379436 0.0736618 0.021876 0.113912 0.130301 0.199508 0.146153 0.728048 0.0379436 0.0627238 0 0.09699 0.196735 0.0379436 0.0822111 0.370684 0.0954834 0.0471717 0.0615295 0.154421 0.0505915 0.0252957 0.0951397 0.178217 0.200689 0.334707 0.347239 0.220267 0.0656281 0.0834055 0.291649 0.0379436 0.0753717 0.0808994 0.106136 0.196191 0.0345239 0.061014 0.0713276 0.0972477 0.233774 0.428133 0.598735 0.0440957 0.0126479 0.0282 0.0739196 0.0126479 0.0513877 0.167784 0.0252957 0.0782759 0.0252957 0.159912 0.521526 0.0563999 0.392487 0.449042 0.781825 0.0909238 0.211336 0.0636919 0.0345239 0.0425577 0.132287 0.0126479 0.120834 0.0724675 0.766519 0.106991 0.119124 0.546575 1.0355 1.39162 0.043752 0.0909238 0.114053 0 0.0345239 0.0410196 0.11988 0.170781 0.170795 0.0656281 0.263482 0.021876 0.0362337 0.111207 0.0661435 0.0379436 0.213303 0.021876 0.0454619 0.047968 0.0704999 0.0559222 0.0749736 0.0678767 0.130293 0 0.0408478 0.0126479 0.0583675 0.0345239 0.0252957 0.0862301 0.118571 0.0471717 0.132286 0.0408478 0.0126479 0.149733 0.153907 0.224119 0.404658 0.0252957 0.0471717 0.0693914 0.0768238 0.0994026 0.0505915 0.129015 0.137668 0.435425 0.0379436 0.0787914 0.143451 0.182281 0.601927 0.347105 1.67595 0.483498 0.209532 0.861739 0.144935 2.103
1 ___________________________________________________________________________________________________
| | | |
2 _________________________________________________| | | |
| | | | | | | | | |
127 _| | | | | | | | | |
| | | | | | | | |
51 ___| | | | | | | | |
| | | | | | | | |
70 _| | | | | | | | |
| | | | | | | |
102 _____| | | | | | | |
| | | | | | | |
17 _____| | | | | | | |
| | | | | | |
19 _________| | | | | | |
| | | | | | |
137 _____| | | | | | |
| | | | | |
3 _________________________________| | | | | |
| | | | | | | | | | |
18 _| | | | | | | | | | |
| | | | | | | | | | |
7 _| | | | | | | | | | |
| | | | | | | | | | |
55 | | | | | | | | | | |
| | | | | | | | | |
12 ___| | | | | | | | | |
| | | | | | | | |
22 _________| | | | | | | | |
| | | | | | | | | |
97 _| | | | | | | | | |
| | | | | | | | |
39 ___| | | | | | | | |
| | | | | | | |
6 _________________| | | | | | | |
| | | | | | | | | | |
37 ___| | | | | | | | | | |
| | | | | | | | | | |
106 _| | | | | | | | | | |
| | | | | | | | | | |
87 _| | | | | | | | | | |
| | | | | | | | | |
9 _______| | | | | | | | | |
| | | | | | | | | | | |
13 _| | | | | | | | | | | |
| | | | | | | | | | | |
100 _| | | | | | | | | | | |
| | | | | | | | | | |
72 ___| | | | | | | | | | |
| | | | | | | | | |
52 _______| | | | | | | | | |
| | | | | | | | |
99 _________| | | | | | | | |
| | | | | | | |
25 _______________| | | | | | | |
| | | | | | | |
79 _______________| | | | | | | |
| | | | | | | | |
15 _________| | | | | | | | |
| | | | | | | | |
43 ___| | | | | | | | |
| | | | | | | | |
76 ___| | | | | | | | |
| | | | | | | |
30 _____________| | | | | | | |
| | | | | | | | | | | |
46 _| | | | | | | | | | | |
| | | | | | | | | | |
115 ___| | | | | | | | | | |
| | | | | | | | | | |
105 ___| | | | | | | | | | |
| | | | | | | | | |
58 _____| | | | | | | | | |
| | | | | | | | |
63 _________| | | | | | | | |
| | | | | | | | | |
93 _| | | | | | | | | |
| | | | | | | | | |
133 _| | | | | | | | | |
| | | | | | | | |
109 ___| | | | | | | | |
| | | | | | | | |
73 ___| | | | | | | | |
| | | | | | | |
114 ___________| | | | | | | |
| | | | | | |
136 ___________________| | | | | | |
| | | | | |
16 ___________________________| | | | | |
| | | | | | | | |
27 _| | | | | | | | |
| | | | | | | | | |
120 || | | | | | | | |
| | | | | | | | |
91 _| | | | | | | | |
| | | | | | | |
103 ___| | | | | | | |
| | | | | | | | |
122 || | | | | | | |
| | | | | | | |
124 _| | | | | | | |
| | | | | | |
28 _______| | | | | | |
| | | | | | | | |
117 _| | | | | | | | |
| | | | | | | |
62 ___| | | | | | | |
| | | | | | | |
138 _| | | | | | | |
| | | | | | |
126 _______| | | | | | |
| | | | | |
31 _______________________| | | | | |
| | | | | | | |
60 _| | | | | | | |
| | | | | | |
88 _________________| | | | | | |
| | | | | |
107 _____________________| | | | | |
| | | | |
4 _____________________________________| | | | |
| | | | | | |
84 ___| | | | | | |
| | | | | |
10 _________| | | | | |
| | | | | | |
40 ___| | | | | | |
| | | | | | |
57 _| | | | | | |
| | | | | | |
49 _| | | | | | |
| | | | | |
21 _____| | | | | |
| | | | | | |
94 | | | | | | |
| | | | | |
121 _____| | | | | |
| | | | | |
123 ___| | | | | |
| | | | |
64 ___________________________________| | | | |
| | | | | |
130 _____| | | | | |
| | | | | |
67 _____| | | | | |
| | | | |
92 _________________________| | | | |
| | | |
112 _________________________________________________| | | |
| | |
5 _________________________________________________________________| | |
| | | | | | | | |
78 _| | | | | | | | |
| | | | | | | |
80 ___| | | | | | | |
| | | | | | |
24 _____| | | | | | |
|| | | | | | | |
89 || | | | | | | |
| | | | | | | |
116 _| | | | | | | |
| | | | | | | |
53 _| | | | | | | |
| | | | | | |
132 _____| | | | | | |
| | | | | |
131 _______| | | | | |
| | | | | |
68 _______| | | | | |
| | | | | |
90 ___| | | | | |
| | | | |
8 ___________| | | | |
| | | | | | |
61 _| | | | | | |
| | | | | | |
29 _| | | | | | |
| | | | | |
45 _____| | | | | |
| | | | | |
119 ___| | | | | |
| | | | | |
128 _| | | | | |
| | | | |
11 _________| | | | |
| | | | | | | | |
38 _| | | | | | | | |
| | | | | | | | |
32 _| | | | | | | | |
| | | | | | | | |
48 _| | | | | | | | |
| | | | | | | |
77 ___| | | | | | | |
| | | | | | | | |
108 _| | | | | | | | |
| | | | | | | |
98 ___| | | | | | | |
| | | | | | | |
101 ___| | | | | | | |
| | | | | | |
41 _____| | | | | | |
|| | | | | | | | |
44 || | | | | | | | |
| | | | | | | | |
81 _| | | | | | | | |
| | | | | | | | | |
95 || | | | | | | | |
| | | | | | | | |
56 _| | | | | | | | |
| | | | | | | | |
83 _| | | | | | | | |
| | | | | | | | |
110 _| | | | | | | | |
| | | | | | | |
69 ___| | | | | | | |
| | | | | | |
36 _____| | | | | | |
| | | | | | | |
47 _| | | | | | | |
| | | | | | |
75 _____| | | | | | |
| | | | | | |
113 _| | | | | | |
| | | | | | |
134 | | | | | | |
| | | | | |
35 _______| | | | | |
| | | | | |
74 _______| | | | | |
| | | | |
50 _________| | | | |
| | | |
23 ___________________| | | |
| | | | | | |
33 _| | | | | | |
| | | | | | |
42 _| | | | | | |
| | | | | |
104 ___| | | | | |
| | | | | |
96 ___| | | | | |
| | | | | |
86 ___| | | | | |
| | | | | |
125 _| | | | | |
| | | | |
26 _____| | | | |
| | | | |
71 _____| | | | |
| | | |
14 ___________________| | | |
| | | | | | |
54 _| | | | | | |
| | | | | |
66 ___| | | | | |
| | | | |
65 _____| | | | |
| | | |
129 _______| | | |
| | |
111 ___________________________| | |
| | |
20 _______________| | |
| |
34 _______________________________________________________________________________| |
| | |
59 _____________________| | |
| | |
82 _________| | |
| |
118 _______________________________________| |
| |
135 _____| |
|
85 ___________________________________________________________________________________________________|
child cluster distance scale coefficient: 0.943282
diameter scale coefficient: 0.940673
[14]:
matrix.nb_row
[14]:
138
[49]:
import matplotlib.pyplot as plt
[50]:
%matplotlib inline
[51]:
plt.rcParams['figure.figsize'] = [100, 100]
fig, ax = plt.subplots()
ax.plot(range(1000), 'w')
fig.patch.set_visible(False)
ax.axis('off')
fig.text(0.1, 0.9, clust3, fontsize=12)
plt.show()
[ ]: